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Methylation of INK4 and CIP/KIP families of cyclin-dependent kinase inhibitor in chronic lymphocytic leukaemia in Chinese patients
  1. C S Chim1,
  2. T K Fung1,
  3. K F Wong2,
  4. J S Lau3,
  5. M Law4,
  6. R Liang1
  1. 1Department of Medicine, Queen Mary Hospital, Hong Kong
  2. 2Department of Pathology, Queen Elizabeth Hospital
  3. 3Department of Medicine, Queen Elizabeth Hospital
  4. 4University Department of Medicine and Clinical Oncology, Queen Mary Hospital
  1. Correspondence to:
    C S Chim
    University Department of Medicine, Queen Mary Hospital, University of Hong Kong, Pokfulam Road, Hong Kong;jcschim{at}hku.hk

Abstract

Background: INK4 (p15, p16, p18 and p19) and CIP/KIP (p21, p27 and p57) are two families of cyclin-dependent kinase inhibitors (CKI) targeting CDK4/6 and CDK2, respectively.

Aim: To study the role of methylation in the inactivation of CKI in chronic lymphocytic leukaemia (CLL).

Materials and methods: Methylation-specific polymerase chain reaction was carried out on DNA obtained from the bone marrow of 56 newly diagnosed patients with CLL.

Results: Similar demographic features and clinical outcome were observed in our patients when compared with Caucasian patients, including an indolent clinical course (10-year overall survival 51%) and advanced Rai stage (p = 0.006), and a high-risk karyotype such as trisomy 12 and complex aberrations (p = 0.03). In the INK4 family, methylation in p15 and p16 occurred in 20 (35.7%) and 8 (14.3%) patients, respectively. In all, 5 (8.9%) CLL samples harboured concurrent methylation of both p15 and p16. Apart from an association of p16 methylation with higher presenting leucocyte count (64.5×109/l in methylated p16 and 16.0×109/l in unmethylated p16 patients; p = 0.016), there was no association between p15 and p16 methylation and age, sex and Rai stage. No difference was observed in the overall survival for patients with and without p15 and p16 methylation. By contrast, p18 and Rb were unmethylated in all samples. In the CIP/KIP family, apart from infrequent methylation of p57 in 4 (7.1%) patients, methylation of p21 and p27 was uniformly absent.

Conclusion:p15 and, less frequently, p16 of the INK4 family of CKI, instead of the CIP or KIP family, were targeted by methylation in CLL. p16 methylation was associated with a higher lymphocyte count at presentation. This is the first comprehensive study of the epigenetic dysregulation of the INK4 and CIP/KIP families of CKI in Chinese patients with CLL.

  • CDK4/6, cyclin-dependent kinases 4 and 6
  • CKI, cyclin-dependent kinase inhibitors
  • CLL, chronic lymphocytic leukaemia
  • MSP, methylation-specific polymerase chain reaction
  • M-MSP, methylated MSP
  • U-MSP, unmethylated MSP
  • PCR, polymerase chain reaction

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Footnotes

  • Published Online First 24 March 2006

  • Competing interests: None declared.

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