Cy5 sample | OUMS cell line | Peripheral CS | Normal cartilage | Normal cartilage |
Cy3 sample | SW1353 cell line | Central CS | Central CS | Peripheral CS |
Mean signal/no flags: Cy5* | 3078/4026 | 1299/1947 | 907/1192 | 949/1377 |
Mean background/no flags Cy5* | 499/486 | 575/560 | 627/5726 | 662/686 |
Mean signal/no flags Cy3* | 3095/4077 | 1155/1842 | 440/613 | 489/817 |
Mean background/no flags Cy3* | 512/527 | 402/405 | 344/340 | 267/274 |
No. of flags† | 662 | 1150 | 1448 | 1452 |
Range of ratios‡ | 49–0.067 | 46–0.053 | 22–0.061 | 27–0.021 |
Cy5/Cy3 ratios >3 | 236 | 57 | 31 | 23 |
Cy5/Cy3 ratios >2 | 421 | 130 | 93 | 109 |
Cy3/Cy5 ratios >3 | 225 | 59 | 31 | 76 |
Cy3/Cy5 ratios >2 | 438 | 155 | 65 | 125 |