Aim: To compare clonal T cell receptor γ (TCRγ) gene rearrangements in frozen and formalin-fixed paraffin wax-embedded (FFPE) tissue, using capillary electrophoresis for use in diagnostics, as T cell lymphomas may be difficult to diagnose by conventional methods.
Methods: The DNA for PCR was extracted from frozen and FFPE tissue, cell lines and blood. PCR primers Vγ1-8, Vγ9, Vγ10 or Vγ11 (5′ end labelled) combined with a mixture of JγP1/JγP/JγP2/Jγ2 (unlabelled) were used. Monoclonal cases were sequenced and clonality, reproducibility, sensitivity and specificity analyses were carried out.
Results: In all cases the molecular test was found to be in agreement with the histological diagnosis. Discrepancies were found between frozen and FFPE tissue in 18 of 56 (32%) tests. The method was highly reproducible. The sensitivity was found to be 0.5% for cell lines and 1% for patient specimens and the specificity 100%. The junctional region between the Vγ and Jγ segments was specific for each patient.
Conclusions: Capillary electrophoresis of PCR products from frozen and FFPE tissue is suitable for detecting clonal TCRγ gene rearrangements. It is important, however, to correlate the results with conventional morphological and immunohistochemical studies.
- FFPE, formalin-fixed and paraffin wax-embedded
- TCRγ, T cell receptor γ
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Published Online First 6 February 2006
Funding: This study was supported by the A P Møller and Spouse Chastine Mc-Kinney Møller Foundation, the Clinical Institute of Århus University, the Johannes Fogh-Nielsens and Mrs Ella Fogh-Nielsens Foundation, the Research Foundation of Århus County Hospital, the Research Initiative for Århus County, and the Research Foundation of Århus University.
Competing interests: None declared.