Cytological sample preparations in relation to SiRe run metric parameters
Patients (n=294) | Clinical characteristics n | Average reads per sample n | Mean number of mapped reads per sample | Median read length bp | Percentage reads on targets % | Average reads per amplicon n | Uniformity of coverage % |
Cytology (n=164) | Smear (n=125) | 190 128.67 | 188 937.69 | 131.38 | 95.25 | 4404.95 | 97.39 |
Cell – Block (n=39) | 146 167.03 | 145 370.26 | 130.79 | 96.43 | 3373.49 | 98.34 |
bp, base pairs.