Sample type in relation to SiRe run metric parameters
Patients (n=294) | Clinical characteristics n | Average reads per sample n | Mean number of mapped reads per sample | Median read length bp | Percentage reads on targets % | Average reads per amplicon n | Uniformity of coverage % |
Histology (n=130) | Resection (n=34) | 126 479.91 | 125 965.03 | 128.18 | 96.29 | 2867.45 | 97.70 |
Biopsy (n=96) | 157 269.97 | 155 451.70 | 130.48 | 97.40 | 3564.42 | 98.12 | |
Citology (n=164) | FNA (n=142) | 174 953.35 | 173 905.40 | 131.04 | 95.88 | 4062.37 | 97.61 |
Brushing/effusion (n=22) | 210 146.45 | 208 731.08 | 132.50 | 93.28 | 4772.07 | 97.67 |
bp, base pairs.